kwan lab
AnalysisWeb InterfaceCitationSpeciesAgeSampleMethodIsoformAccessionSpatio-temporalhttp://hbatlas.org/Johnsonet al., 2009humanlifespanmulti, macrodissectionmicroarray−GSE13344Kanget al., 2011.GSE25219http://hbatlas.org/mouseNCXtranscriptome/Fertuzinhoset al., 2014mousepostnatalCtx layer, microdissectionRNA-seq−SRP031888http://www.blueprintnhpatlas.orgBakkenet al., 2016macaquelifespanmulti, macrodissection & LMDmicroarray−at databaseSpatialhttp://human.brain-map.org/Hawrylyczet al., 2012humanadultmulti, macrodissection & LMDmicroarray−at databasehttp://genserv.anat.ox.ac.uk/layersBelgardet al., 2011mouseadultCtx layer, microdissectionRNA-seq+GSE27243http://rakiclab.med.yale.edu/transcriptome/Ayoubet al., 2011mouseembryonicCtx embryonic layer, LMDRNA-seq+GSE30765http://www.brainspan.org/lcm/Milleret al., 2014humanmidfetalmulti, LMDmicroarray−at databasehttps://www.gtexportal.org/GTEx Consortium, 2015humanadultmany tissues and cell linesRNA-seq+at databaseTemporalhttp://braincloud.jhmi.edu/Colantuoniet al., 2011.humanlifespanprefrontal Ctx, macrodissectionmicroarray−GSE30272Cell type-specifichttp://brainrnaseq.org/Zhanget al., 2014mouseadultCtx, genetic labeling, immunopanningRNA-seq+GSE52564Zhanget al., 2016humanfetal/adultCtx, Hp, immunopanningRNA-seq−GSE73721http://genetics.wustl.edu/jdlab/csea-tool-2/Doyleet al., 2008mouseadultmulti, genetic labeling,ribosome afnity purifcationmicroarray−GSE13379Xuet al., 2014http://decon.fas.harvard.edu/Molyneauxet al., 2015mouseembryonicCtx, transcription factor FACSRNA-seq+GSE63482http://hipposeq.janelia.org/Cembrowskiet al., 2016mouseadultHp, genetic labeling, manual selectionRNA-seq−GSE74985http://neuroseq.janelia.orgSuginoet al., 2017mouseadultmulti, genetic labeling, manual selectionRNA-seq+GSE79238Single-cellhttp://linnarssonlab.org/cortexZeiselet al., 2015mouseadultCtx, FluidigmRNA-seq−GSE60361http://genebrowser.unige.ch/science2016/Telleyet al., 2016mouseembryonicCtx, ventricle dye, FACS, FluidigmRNA-seq−N/Ahttps://portals.broadinstitute.org/single_cellShekharet al., 2016mouseadultretina, genetic labeling, Drop-seqRNA-seq−GSE81905https://portals.broadinstitute.org/single_cellHabibet al., 2016mouseadultHp, single nuclei, FACS, sNuc-seqRNA-seq−GSE84371https://bit.ly/cortexSingleCellNowakowskiet al., 2017humanfetalCtx, ganglionic eminence, FluidigmRNA-seq−PRJNA295469http://gbmseq.org/Darmaniset al., 2017humanadultCtx tumor, immunopanning, FACSRNA-seq−GSE84465Integrativehttps://www.encodeproject.org/Dunhamet al., 2012manymanymany tissues and cell linesmulti-omics+manyhttp://celltypes.brain-map.org/Tasicet al., 2016mouseadultCtx, genetic labeling, FACSRNA-seq−GSE71585

Highlighted brain transcriptome databases in Keil et al. 2018. Ctx, cortex; Hp, hippocampus; multi, multiple brain regions; LMD, laser microdissection; FACS, fluorescence-activated cell sorting. Isoform column indicates availability of isoform-specific information publicly available on database.